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NeuroGenetics Curriculum·advanced·30 min

Genetic Neuromuscular Disorders

A genetics-focused guide to hereditary neuromuscular disorders — spanning the muscular dystrophies, spinal muscular atrophy, congenital myopathies, inherited neuropathies, and channelopathies. Emphasizes molecular diagnosis, genotype-phenotype correlations, and the rapidly evolving therapeutic landscape.

Tags: Neurogenetics · Advanced

Learning Objectives

  1. 1.Classify neuromuscular disorders by level of involvement (anterior horn, motor nerve, NMJ, muscle) and recognize characteristic clinical patterns
  2. 2.Explain the genetic basis of Duchenne/Becker muscular dystrophy and apply the reading-frame rule to predict phenotype
  3. 3.Diagnose and manage spinal muscular atrophy (SMA) with awareness of gene therapy and approved treatments
  4. 4.Recognize the major congenital myopathies and their causative genes
  5. 5.Apply the diagnostic approach to inherited neuropathy (Charcot-Marie-Tooth) and identify key genes

01Classification and Clinical Approach to Neuromuscular Disease

Neuromuscular disorders are divided by the anatomical level of involvement: anterior horn cell (lower motor neuron), peripheral nerve (motor/sensory), neuromuscular junction (NMJ), or muscle. The clinical pattern — proximal vs. distal weakness, presence of sensory involvement, reflexes, cardiac involvement, family history — guides localization and genetic differential. Electromyography (EMG) and nerve conduction studies (NCS) are essential for localization before genetic testing.

Key Points

  • Proximal > distal weakness without sensory loss: suggests myopathy or anterior horn disease (SMA); elevated CK points to myopathy
  • Distal > proximal weakness with sensory loss: peripheral neuropathy (CMT); decreased/absent reflexes; nerve conduction shows demyelinating or axonal pattern
  • NMJ disorder (myasthenia gravis, congenital myasthenic syndrome): fatigable weakness, ptosis, diplopia; EMG shows decremental response on repetitive nerve stimulation
  • CK level: massively elevated (>10× ULN) in muscular dystrophies (DMD, LGMD); mildly elevated in congenital myopathies; normal in neuropathies; normal or mildly elevated (2–4× ULN) in anterior horn cell disease (e.g., SMA type 3)
  • Muscle biopsy: essential in many congenital myopathies (nemaline rods, central cores, fiber type disproportion); immunohistochemistry for dystrophin, sarcoglycans, caveolin guides genetic testing. For an overview of testing strategies and expected yields, see the [[diagnostic-yields|Diagnostic Yields]] module

02Duchenne and Becker Muscular Dystrophy

Duchenne muscular dystrophy (DMD) and Becker muscular dystrophy (BMD) are allelic X-linked recessive disorders caused by variants in the DMD gene (Xp21.2), encoding dystrophin — the largest gene in the human genome. Dystrophin links the intracellular actin cytoskeleton to the extracellular matrix via the dystrophin-associated protein complex (DAPC). Loss of dystrophin leads to membrane fragility, calcium influx, oxidative stress, and progressive muscle fiber necrosis and replacement by fat and connective tissue.

Key Points

  • Reading-frame rule: DMD variants that disrupt the translational reading frame (frameshift deletions, nonsense variants) → no functional dystrophin → DMD phenotype; in-frame deletions allow production of truncated but partially functional dystrophin → BMD (milder)
  • Deletions (65–70% of cases): multi-exon deletions now detected first-line by NGS gene panels with integrated deletion/duplication analysis (captures point mutations, small indels, and large del/dups in one workflow); MLPA remains an effective confirmatory or alternative method specifically for del/dup detection; reading frame predicts DMD vs. BMD with ~90% accuracy — exons 51, 45, and 53 skipping are therapeutic targets
  • DMD natural history: onset age 3–5 with proximal weakness, Gowers sign, calf pseudohypertrophy; loss of ambulation ~12 years; cardiomyopathy universal by age 18; respiratory failure without intervention
  • Approved therapies: exon 51 skipping (eteplirsen — FDA 2016, AO-mediated, small benefit), exon 53 skipping (golodirsen — FDA 2019; viltolarsen — FDA 2020), exon 45 skipping (casimersen — FDA 2021), stop codon readthrough (ataluren for nonsense variants — EU approved), gene therapy (delandistrogene moxeparvovec/Elevidys — approved FDA 2023 for 4–5 year olds)
  • Carrier females: CK often elevated; cardiomyopathy risk in ~10%; cardiac screening recommended; manifesting carriers with significant weakness possible due to skewed X-inactivation

03Spinal Muscular Atrophy

Spinal muscular atrophy (SMA) has historically been the second most common fatal autosomal recessive disorder in children (after cystic fibrosis), though mortality has decreased dramatically with the advent of disease-modifying therapies (nusinersen, risdiplam, onasemnogene abeparvovec). It is caused by loss of survival motor neuron protein (SMN) due to homozygous deletion of the SMN1 gene on 5q13. SMN is essential for snRNP biogenesis and pre-mRNA splicing in motor neurons. The SMN2 gene, a nearly identical paralog on the same chromosome, produces only ~10–15% full-length SMN due to alternative splicing at exon 7 — the copy number of SMN2 is the major modifier of phenotype severity.

Key Points

  • SMN1 deletion (exon 7+8): detected by MLPA or quantitative PCR; ~95% of patients have homozygous SMN1 exon 7 deletion; ~5% are compound heterozygous with a deletion on one allele and a point variant on the other
  • SMA types: Type 0 (prenatal onset, severe congenital hypotonia, death <6mo); Type 1 (Werdnig-Hoffmann, onset <6mo, never sits, death <2yr without treatment); Type 2 (onset 6–18mo, sits but never stands); Type 3 (Kugelberg-Welander, onset >18mo, achieves walking); Type 4 (adult onset, mild)
  • SMN2 copy number as modifier: 1–2 copies → Type 1; 3 copies → Type 2/3; 4+ copies → Type 3/4; higher SMN2 copy number associated with milder phenotype
  • Nusinersen (Spinraza): antisense oligonucleotide administered intrathecally; modifies SMN2 splicing to include exon 7, increasing full-length SMN; approved 2016; first disease-modifying SMA therapy
  • Risdiplam (Evrysdi): oral small-molecule SMN2 splicing modifier; promotes exon 7 inclusion in SMN2 mRNA, increasing full-length SMN protein; approved FDA 2020 for patients ≥2 months; advantage of oral administration and CNS + peripheral tissue distribution
  • Onasemnogene abeparvovec (Zolgensma): AAV9-SMN1 gene replacement; single IV infusion; approved 2019 for children <2 years (US); most effective when given presymptomatically via newborn screening; also approved intrathecally for older/heavier patients in some countries. For detailed coverage of gene therapy and ASO mechanisms, see the [[therapies|Gene and Molecular Therapies]] module

04Congenital Myopathies and Muscular Dystrophies

Congenital myopathies are a heterogeneous group of genetic muscle disorders defined primarily by structural abnormalities on muscle biopsy rather than by dystrophic changes. They typically present at birth or in infancy with hypotonia, weakness, and respiratory insufficiency. The major genetic muscular dystrophies beyond DMD/BMD include the limb-girdle muscular dystrophies (LGMD), Emery-Dreifuss MD, and facioscapulohumeral MD (FSHD).

Key Points

  • Nemaline myopathy (NEB, ACTA1, TPM2/3, TNNT1): nemaline rods on Gomori trichrome biopsy; NEB-related forms often severe; ACTA1 point variants more variable; respiratory and feeding difficulties predominate
  • Central core disease (RYR1, dominant or recessive): central cores on oxidative stain; associated with malignant hyperthermia susceptibility (RYR1); myopathy relatively static; cores spare periphery of fiber
  • FSHD (facioscapulohumeral MD): facial, scapular, and distal leg weakness; contraction of D4Z4 repeats on 4q35 (FSHD1) or SMCHD1 methylation defect (FSHD2) → aberrant DUX4 expression; AD, reduced penetrance
  • Emery-Dreifuss MD (LMNA, EMD/emerin): early joint contractures (elbows, ankles, spine) + slowly progressive humeroperoneal weakness + cardiac conduction disease → sudden death risk; LMNA also causes dilated cardiomyopathy with minimal muscle disease — annual cardiac screening/ICD
  • LGMD classification (2018 ENMC): >30 recognized subtypes including AD (LGMD-D) and AR (LGMD-R) forms; most common: LGMD-R1 (calpain-3/CAPN3), LGMD-R2 (dysferlin/DYSF, elevated CK), LGMD-R3-6 (sarcoglycanopathies), LGMD-R9 (anoctamin-5/ANO5)

05Hereditary Neuropathies and Channelopathies

Charcot-Marie-Tooth disease (CMT) is the most common hereditary neuromuscular disorder, with a prevalence of ~1/2,500. It is genetically heterogeneous, with over 100 causative genes. The hereditary channelopathies (periodic paralysis, myotonia, paramyotonia) are autosomal dominant ion channel disorders causing episodic muscle weakness or stiffness. Together with congenital myasthenic syndromes, they round out the spectrum of hereditary neuromuscular disease.

Key Points

  • CMT1A: PMP22 duplication on 17p12 (detected by MLPA) — most common CMT (~40%); demyelinating; uniform slowing of NCVs (MCV <38 m/s in median nerve); onset in childhood with high arches, hammertoes, distal weakness
  • CMT1X: GJB1 (connexin-32) mutations; X-linked dominant; males more severely affected; intermediate NCV pattern; CNS involvement (T2 white matter changes) in some males
  • CMT2A: MFN2 mutations; axonal CMT; onset in first two decades; severe disability common; length-dependent axonal degeneration; MFN2 encodes mitofusin 2 essential for mitochondrial dynamics
  • Myotonic dystrophy type 1 (DMPK CTG repeat): most common adult MD; multisystem: myotonia, progressive weakness (facial, distal, respiratory), cataracts, cardiac conduction, endocrine, cognitive; anticipation; DMPK CUG repeats sequester MBNL1 → RNA splicing dysregulation
  • Periodic paralysis: hypokalemic (CACNA1S or SCN4A — AD; attacks triggered by carbohydrate/rest after exercise; treat: acetazolamide, avoid triggers), hyperkalemic/normokalemic (SCN4A — AD; treat: mexiletine, thiazide diuretics); myotonia congenita (CLCN1 — muscle chloride channel; Thomsen AD, Becker AR; improves with exercise — 'warm-up' phenomenon). For pharmacogenomic considerations in neuromuscular disease (e.g., malignant hyperthermia with RYR1), see the [[pharmacogenetics|Pharmacogenetics]] module

Quiz Questions

1. A 6-month-old boy is found to have a massively elevated CK (18,000 U/L) on routine blood work obtained during an unrelated emergency visit. He is not yet showing overt weakness. His maternal uncle was wheelchair-bound by age 14. The family history pattern and CK level are most consistent with:

  1. A.Spinal muscular atrophy type 1 — CK is typically massively elevated in SMA and consistent with this family pattern
  2. B.Presymptomatic Duchenne muscular dystrophy — X-linked inheritance and massive CK elevation precede clinical weakness✓
  3. C.Congenital myasthenic syndrome — CK elevation with fatigable weakness is a hallmark of this neuromuscular junction disorder
  4. D.Myotonic dystrophy type 1 — the congenital form presents with massive CK elevation and hypotonia in early infancy

Duchenne muscular dystrophy is X-linked recessive. The affected maternal uncle (wheelchair-bound by 14) is consistent with DMD segregating through the maternal line. CK is massively elevated (>10x ULN) in DMD, often detectable from birth — well before clinical weakness becomes apparent (typically age 3-5). SMA type 1 has normal or only mildly elevated CK. Congenital myasthenic syndromes do not cause elevated CK. Congenital DM1 presents with hypotonia and respiratory failure, not primarily CK elevation. This scenario underscores why incidental CK findings in infant boys should prompt consideration of dystrophinopathy.

2. An 8-year-old boy with suspected Becker muscular dystrophy is found to have a deletion of DMD exons 45–47. Using the reading-frame rule, what phenotype does this predict and why?

  1. A.Duchenne muscular dystrophy — all multi-exon deletions in the DMD gene produce the severe phenotype regardless of reading frame
  2. B.Becker muscular dystrophy — exons 45–47 deletion is in-frame, allowing production of truncated but partially functional dystrophin✓
  3. C.Limb-girdle muscular dystrophy — deletions in the central rod domain of DMD produce LGMD rather than dystrophinopathy
  4. D.No clinical phenotype — in-frame deletions in the DMD gene are always considered benign polymorphisms without consequences

The reading-frame rule predicts that in-frame deletions of the DMD gene preserve the translational reading frame, allowing production of a shorter but partially functional dystrophin protein — resulting in the milder Becker muscular dystrophy (BMD) phenotype. Deletion of exons 45-47 is in-frame. Out-of-frame deletions, by contrast, produce a premature stop codon and no functional dystrophin, leading to severe Duchenne muscular dystrophy. The reading-frame rule predicts the correct phenotype with approximately 90% accuracy. This patient's milder course (ambulant at age 8 with suspected BMD) is consistent with the in-frame prediction.

3. A 3-month-old infant with SMA type 1 (homozygous SMN1 deletion, 2 copies of SMN2) is being considered for onasemnogene abeparvovec (Zolgensma). The parents ask how this therapy differs from nusinersen. The best explanation is:

  1. A.Both are antisense oligonucleotides that modify SMN2 splicing, but onasemnogene is given orally while nusinersen requires intrathecal injection
  2. B.Onasemnogene is an AAV9-delivered SMN1 gene replacement (single IV infusion); nusinersen is an ASO requiring repeated intrathecal injections✓
  3. C.Onasemnogene replaces the SMN2 gene with a corrected copy, while nusinersen increases the genomic copy number of SMN1 directly
  4. D.Both are gene replacement therapies delivering SMN1, but onasemnogene uses a viral vector while nusinersen uses a lipid nanoparticle

Onasemnogene abeparvovec (Zolgensma) is an AAV9-based gene therapy that delivers a functional copy of the SMN1 gene via a single intravenous infusion. It provides a permanent source of SMN protein expression from the transgene. Nusinersen (Spinraza), in contrast, is an antisense oligonucleotide that modifies SMN2 pre-mRNA splicing to include exon 7, increasing full-length SMN protein production — it requires ongoing intrathecal injections. Both therapies have shown dramatic efficacy when given early, but they work through fundamentally different mechanisms: gene replacement versus splicing modification.

4. A 45-year-old man presents with bilateral foot drop, high-arched feet, hammertoes, and distal leg atrophy. Nerve conduction studies show uniform slowing of motor conduction velocities (median nerve MCV 28 m/s). His father has a similar but milder phenotype. The most likely diagnosis and genetic mechanism are:

  1. A.CMT1A caused by PMP22 duplication on 17p12 — the most common CMT with demyelinating pattern and AD inheritance✓
  2. B.CMT2A caused by MFN2 mutations — axonal CMT with preserved or mildly reduced conduction velocities
  3. C.Hereditary neuropathy with liability to pressure palsies (HNPP) caused by PMP22 deletion — episodic, not chronic
  4. D.Distal spinal muscular atrophy — lower motor neuron disease without sensory involvement on examination

CMT1A, caused by a 1.5 Mb duplication on 17p12 encompassing the PMP22 gene, is the most common form of Charcot-Marie-Tooth disease (~40% of all CMT). It is autosomal dominant and produces a demyelinating neuropathy with uniformly slowed motor conduction velocities (MCV typically <38 m/s in the median nerve). The classic clinical features include distal leg weakness (foot drop), high-arched feet (pes cavus), hammertoes, and distal atrophy, with onset in childhood or adolescence. The PMP22 duplication is detected by MLPA. CMT2A (MFN2) causes axonal neuropathy with preserved or mildly reduced conduction velocities.

5. A 22-year-old woman who is a known carrier of a DMD deletion (confirmed by genetic testing after her brother was diagnosed with DMD) presents with exertional fatigue and mild proximal weakness. Her CK is 800 U/L. Echocardiography shows mildly reduced left ventricular function. The most likely explanation is:

  1. A.She has developed an autoimmune myopathy unrelated to her DMD carrier status that requires immunosuppression
  2. B.She is a manifesting DMD carrier — skewed X-inactivation can cause muscular and cardiac involvement in females✓
  3. C.Females cannot manifest symptoms of DMD because it is an X-linked recessive disorder requiring two affected alleles
  4. D.The echocardiographic findings are incidental and unrelated to the DMD carrier state in this young woman

Approximately 10% of female DMD carriers develop clinically significant cardiomyopathy, and a subset develop skeletal muscle weakness. This occurs due to skewed X-inactivation, where the X chromosome carrying the normal DMD allele is preferentially inactivated in cardiac and/or skeletal muscle, resulting in insufficient dystrophin expression. Manifesting carriers can range from mildly symptomatic to severely affected. Current guidelines recommend cardiac surveillance (echocardiography or cardiac MRI) for all female DMD carriers, starting in adolescence and continuing lifelong, because cardiomyopathy can develop even in the absence of skeletal muscle symptoms.

6. A father with myotonic dystrophy type 1 (DM1, 150 CTG repeats) is concerned about transmission to his children. Compared to maternal transmission of large expansions, how does paternal transmission of DM1 typically differ?

  1. A.Paternal transmission always produces congenital myotonic dystrophy regardless of the father's repeat size or clinical severity
  2. B.Paternal transmission typically does not cause congenital DM1 — congenital forms occur almost exclusively with maternal transmission✓
  3. C.Paternal transmission is protective — the CTG repeat always contracts during spermatogenesis, producing smaller alleles in offspring
  4. D.There is no difference between maternal and paternal transmission of DM1 repeats in terms of expansion risk or severity

Congenital myotonic dystrophy (CDM) — the most severe form, presenting with neonatal hypotonia, respiratory failure, and intellectual disability — occurs almost exclusively with maternal transmission of large CTG expansions (typically >800 repeats). Paternal transmission can still result in modest repeat expansion (anticipation occurs), and affected fathers can pass on adult-onset or childhood-onset DM1 to offspring. However, the dramatic expansions to >1000 repeats that cause CDM are a phenomenon of maternal meiosis. This parent-of-origin effect is an important genetic counseling distinction.

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